Detailed information of SNP:
|
SNP ID:
sf0610284179(Gbrowse)
Chromosome: chr06 Position: 10284179 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 93.10% | 6.90% |
| All Indica | 790 | 91.14% | 8.86% |
| All Japonica | 492 | 97.15% | 2.85% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 367 | 86.38% | 13.62% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 90 | 91.11% | 8.89% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610284179 | C->T | INTERGENIC | None |