Detailed information of SNP:
|
SNP ID:
sf0610286106(Gbrowse)
Chromosome: chr06 Position: 10286106 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 64.43% | 35.57% |
| All Indica | 799 | 87.48% | 12.52% |
| All Japonica | 495 | 35.76% | 64.24% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 67.77% | 32.23% |
| Temperate Japonica | 333 | 37.84% | 62.16% |
| Tropical Japonica | 94 | 35.11% | 64.89% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610286106 | T->A | INTERGENIC | None |