Detailed information of SNP:
|
SNP ID:
sf0610289319(Gbrowse)
Chromosome: chr06 Position: 10289319 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1393 | 54.13% | 45.87% |
| All Indica | 776 | 74.23% | 25.77% |
| All Japonica | 494 | 29.76% | 70.24% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 366 | 80.33% | 19.67% |
| Indica II | 210 | 79.05% | 20.95% |
| Indica Intermediate | 200 | 58.00% | 42.00% |
| Temperate Japonica | 332 | 33.43% | 66.57% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610289319 | G->A | INTERGENIC | None |