Detailed information of SNP:
SNP ID:
sf0610317907(Gbrowse)
Chromosome: chr06 Position: 10317907 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1385 | 64.62% | 35.38% |
All Indica | 771 | 89.49% | 10.51% |
All Japonica | 491 | 34.22% | 65.78% |
Aus | 67 | 11.94% | 88.06% |
Indica I | 357 | 89.08% | 10.92% |
Indica II | 207 | 95.17% | 4.83% |
Indica Intermediate | 207 | 84.54% | 15.46% |
Temperate Japonica | 332 | 36.75% | 63.25% |
Tropical Japonica | 92 | 31.52% | 68.48% |
Japonica Intermediate | 67 | 25.37% | 74.63% |
Group VI/Aromatic | 14 | 7.14% | 92.86% |
Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0610317907 | T->C | LOC_Os06g17790(LOC_Os06g17790.1) | Synonymous |