Detailed information of SNP:
|
SNP ID:
sf0610322186(Gbrowse)
Chromosome: chr06 Position: 10322186 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 94.48% | 5.52% |
| All Indica | 793 | 93.69% | 6.31% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 206 | 85.92% | 14.08% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610322186 | A->T | INTERGENIC | None |