Detailed information of SNP:
|
SNP ID:
sf0610322246(Gbrowse)
Chromosome: chr06 Position: 10322246 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 64.77% | 35.23% |
| All Indica | 796 | 86.43% | 13.57% |
| All Japonica | 490 | 39.18% | 60.82% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 374 | 90.11% | 9.89% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 209 | 79.43% | 20.57% |
| Temperate Japonica | 328 | 47.26% | 52.74% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610322246 | A->C | INTERGENIC | None |