Detailed information of SNP:
|
SNP ID:
sf0610342439(Gbrowse)
Chromosome: chr06 Position: 10342439 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 56.35% | 43.65% |
| All Indica | 798 | 87.47% | 12.53% |
| All Japonica | 497 | 12.88% | 87.12% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 374 | 92.25% | 7.75% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 68.25% | 31.75% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 35.11% | 64.89% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610342439 | T->A | INTERGENIC | None |