Detailed information of SNP:
|
SNP ID:
sf0610357656(Gbrowse)
Chromosome: chr06 Position: 10357656 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 50.85% | 49.15% |
| All Indica | 798 | 81.08% | 18.92% |
| All Japonica | 497 | 8.25% | 91.75% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 374 | 90.37% | 9.63% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 55.45% | 44.55% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610357656 | A->G | INTERGENIC | None |