Detailed information of SNP:
|
SNP ID:
sf0610357850(Gbrowse)
Chromosome: chr06 Position: 10357850 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1365 | 83.59% | 16.41% |
| All Indica | 749 | 93.32% | 6.68% |
| All Japonica | 495 | 65.25% | 34.75% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 98.65% | 1.35% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 167 | 84.43% | 15.57% |
| Temperate Japonica | 335 | 50.45% | 49.55% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610357850 | C->A | INTERGENIC | None |