Detailed information of SNP:
|
SNP ID:
sf0610358962(Gbrowse)
Chromosome: chr06 Position: 10358962 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 50.78% | 49.22% |
| All Indica | 798 | 81.33% | 18.67% |
| All Japonica | 497 | 8.05% | 91.95% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 374 | 90.91% | 9.09% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 55.45% | 44.55% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610358962 | A->T | INTERGENIC | None |