Detailed information of SNP:
|
SNP ID:
sf0610359688(Gbrowse)
Chromosome: chr06 Position: 10359688 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 53.22% | 46.78% |
| All Indica | 798 | 67.54% | 32.46% |
| All Japonica | 496 | 39.11% | 60.89% |
| Aus | 66 | 3.03% | 96.97% |
| Indica I | 375 | 87.47% | 12.53% |
| Indica II | 212 | 62.26% | 37.74% |
| Indica Intermediate | 211 | 37.44% | 62.56% |
| Temperate Japonica | 334 | 47.60% | 52.40% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610359688 | C->T | INTERGENIC | None |