Detailed information of SNP:
|
SNP ID:
sf0610359716(Gbrowse)
Chromosome: chr06 Position: 10359716 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 57.91% | 42.09% |
| All Indica | 799 | 32.54% | 67.46% |
| All Japonica | 497 | 92.76% | 7.24% |
| Aus | 61 | 98.36% | 1.64% |
| Indica I | 375 | 12.00% | 88.00% |
| Indica II | 213 | 38.50% | 61.50% |
| Indica Intermediate | 211 | 63.03% | 36.97% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610359716 | A->T | INTERGENIC | None |