Detailed information of SNP:
|
SNP ID:
sf0610361021(Gbrowse)
Chromosome: chr06 Position: 10361021 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 50.54% | 49.46% |
| All Indica | 779 | 81.26% | 18.74% |
| All Japonica | 492 | 8.13% | 91.87% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 196 | 97.45% | 2.55% |
| Indica Intermediate | 208 | 48.56% | 51.44% |
| Temperate Japonica | 332 | 2.11% | 97.89% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 66 | 15.15% | 84.85% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610361021 | G->A | LOC_Os06g17850(LOC_Os06g17850.1) | INTRON |