Detailed information of SNP:
|
SNP ID:
sf0610361348(Gbrowse)
Chromosome: chr06 Position: 10361348 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 50.88% | 49.12% |
| All Indica | 799 | 81.23% | 18.77% |
| All Japonica | 497 | 8.05% | 91.95% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 90.40% | 9.60% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 55.92% | 44.08% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610361348 | C->T | LOC_Os06g17850(LOC_Os06g17850.1) | INTRON |