Detailed information of SNP:
|
SNP ID:
sf0610362239(Gbrowse)
Chromosome: chr06 Position: 10362239 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 50.95% | 49.05% |
| All Indica | 799 | 81.48% | 18.52% |
| All Japonica | 497 | 8.25% | 91.75% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 55.45% | 44.55% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610362239 | C->T | LOC_Os06g17850(LOC_Os06g17850.1) | INTRON |