Detailed information of SNP:
|
SNP ID:
sf0610363485(Gbrowse)
Chromosome: chr06 Position: 10363485 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 55.39% | 44.61% |
| All Indica | 799 | 85.61% | 14.39% |
| All Japonica | 497 | 12.68% | 87.32% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 63.03% | 36.97% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 35.11% | 64.89% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610363485 | G->A | LOC_Os06g17850(LOC_Os06g17850.1) | Non-Synonymous SNP |