Detailed information of SNP:
|
SNP ID:
sf0610364503(Gbrowse)
Chromosome: chr06 Position: 10364503 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 55.25% | 44.75% |
| All Indica | 799 | 82.73% | 17.27% |
| All Japonica | 497 | 18.31% | 81.69% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 60.19% | 39.81% |
| Temperate Japonica | 335 | 17.01% | 82.99% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610364503 | C->T | INTERGENIC | None |