Detailed information of SNP:
|
SNP ID:
sf0610364899(Gbrowse)
Chromosome: chr06 Position: 10364899 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 51.68% | 48.32% |
| All Indica | 798 | 81.33% | 18.67% |
| All Japonica | 479 | 8.56% | 91.44% |
| Aus | 65 | 12.31% | 87.69% |
| Indica I | 374 | 90.91% | 9.09% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 55.45% | 44.55% |
| Temperate Japonica | 328 | 2.44% | 97.56% |
| Tropical Japonica | 87 | 26.44% | 73.56% |
| Japonica Intermediate | 64 | 15.62% | 84.38% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610364899 | C->T | LOC_Os06g17860(LOC_Os06g17860.1) | INTRON |