Detailed information of SNP:
|
SNP ID:
sf0610365775(Gbrowse)
Chromosome: chr06 Position: 10365775 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 92.91% | 7.09% |
| All Indica | 790 | 94.81% | 5.19% |
| All Japonica | 497 | 88.53% | 11.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 202 | 91.09% | 8.91% |
| Temperate Japonica | 335 | 83.88% | 16.12% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610365775 | A->G | LOC_Os06g17860(LOC_Os06g17860.1) | INTRON |