Detailed information of SNP:
|
SNP ID:
sf0610366408(Gbrowse)
Chromosome: chr06 Position: 10366408 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1373 | 92.64% | 7.36% |
| All Indica | 799 | 90.24% | 9.76% |
| All Japonica | 451 | 98.00% | 2.00% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 289 | 97.58% | 2.42% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610366408 | G->A | LOC_Os06g17860(LOC_Os06g17860.1) | INTRON |