Detailed information of SNP:
|
SNP ID:
sf0610368828(Gbrowse)
Chromosome: chr06 Position: 10368828 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 89.47% | 10.53% |
| All Indica | 795 | 90.19% | 9.81% |
| All Japonica | 497 | 88.53% | 11.47% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 90.57% | 9.43% |
| Indica Intermediate | 208 | 74.52% | 25.48% |
| Temperate Japonica | 335 | 83.58% | 16.42% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610368828 | C->T | INTERGENIC | None |