Detailed information of SNP:
|
SNP ID:
sf0610370510(Gbrowse)
Chromosome: chr06 Position: 10370510 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1396 | 87.82% | 12.18% |
| All Indica | 776 | 90.21% | 9.79% |
| All Japonica | 497 | 84.91% | 15.09% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 210 | 90.48% | 9.52% |
| Indica Intermediate | 192 | 75.00% | 25.00% |
| Temperate Japonica | 335 | 82.09% | 17.91% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610370510 | T->C | INTERGENIC | None |