Detailed information of SNP:
|
SNP ID:
sf0610380117(Gbrowse)
Chromosome: chr06 Position: 10380117 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 50.81% | 49.19% |
| All Indica | 799 | 21.53% | 78.47% |
| All Japonica | 497 | 92.15% | 7.85% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 9.07% | 90.93% |
| Indica II | 213 | 13.62% | 86.38% |
| Indica Intermediate | 211 | 51.66% | 48.34% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610380117 | T->C | INTERGENIC | None |