Detailed information of SNP:
|
SNP ID:
sf0610381485(Gbrowse)
Chromosome: chr06 Position: 10381485 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 66.17% | 33.83% |
| All Indica | 799 | 91.11% | 8.89% |
| All Japonica | 497 | 35.41% | 64.59% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 36.12% | 63.88% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610381485 | T->C | LOC_Os06g17890(LOC_Os06g17890.1) | INTRON |