Detailed information of SNP:
|
SNP ID:
sf0610389139(Gbrowse)
Chromosome: chr06 Position: 10389139 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 56.47% | 43.53% |
| All Indica | 787 | 26.18% | 73.82% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 372 | 26.61% | 73.39% |
| Indica II | 208 | 17.31% | 82.69% |
| Indica Intermediate | 207 | 34.30% | 65.70% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610389139 | T->C | LOC_Os06g17900(LOC_Os06g17900.1) | Synonymous |