Detailed information of SNP:
|
SNP ID:
sf0610392323(Gbrowse)
Chromosome: chr06 Position: 10392323 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1362 | 96.26% | 3.74% |
| All Indica | 744 | 96.51% | 3.49% |
| All Japonica | 495 | 96.16% | 3.84% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 98.64% | 1.36% |
| Indica II | 172 | 94.77% | 5.23% |
| Indica Intermediate | 203 | 94.09% | 5.91% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610392323 | A->C | INTERGENIC | None |