Detailed information of SNP:
|
SNP ID:
sf0610393033(Gbrowse)
Chromosome: chr06 Position: 10393033 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 73.61% | 26.39% |
| All Indica | 783 | 78.67% | 21.33% |
| All Japonica | 496 | 60.69% | 39.31% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 95.17% | 4.83% |
| Indica II | 203 | 69.95% | 30.05% |
| Indica Intermediate | 207 | 57.49% | 42.51% |
| Temperate Japonica | 334 | 47.90% | 52.10% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610393033 | C->T | INTERGENIC | None |