Detailed information of SNP:
|
SNP ID:
sf0610393970(Gbrowse)
Chromosome: chr06 Position: 10393970 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 64.41% | 35.59% |
| All Indica | 788 | 64.21% | 35.79% |
| All Japonica | 491 | 57.64% | 42.36% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 83.97% | 16.03% |
| Indica II | 211 | 55.92% | 44.08% |
| Indica Intermediate | 209 | 37.80% | 62.20% |
| Temperate Japonica | 335 | 46.87% | 53.13% |
| Tropical Japonica | 92 | 88.04% | 11.96% |
| Japonica Intermediate | 64 | 70.31% | 29.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610393970 | T->C | INTERGENIC | None |