Detailed information of SNP:
|
SNP ID:
sf0610400185(Gbrowse)
Chromosome: chr06 Position: 10400185 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 75.16% | 24.84% |
| All Indica | 778 | 80.98% | 19.02% |
| All Japonica | 494 | 60.93% | 39.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 93.73% | 6.27% |
| Indica II | 209 | 84.21% | 15.79% |
| Indica Intermediate | 202 | 54.46% | 45.54% |
| Temperate Japonica | 335 | 47.76% | 52.24% |
| Tropical Japonica | 92 | 92.39% | 7.61% |
| Japonica Intermediate | 67 | 83.58% | 16.42% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610400185 | T->C | INTERGENIC | None |