Detailed information of SNP:
|
SNP ID:
sf0610409252(Gbrowse)
Chromosome: chr06 Position: 10409252 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 62.68% | 37.32% |
| All Indica | 770 | 34.81% | 65.19% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 26.42% | 73.58% |
| Indica II | 190 | 21.05% | 78.95% |
| Indica Intermediate | 209 | 62.20% | 37.80% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610409252 | G->A | LOC_Os06g17920(LOC_Os06g17920.1) | Synonymous |