Detailed information of SNP:
|
SNP ID:
sf0610409262(Gbrowse)
Chromosome: chr06 Position: 10409262 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 64.27% | 35.73% |
| All Indica | 778 | 38.17% | 61.83% |
| All Japonica | 490 | 99.39% | 0.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 27.03% | 72.97% |
| Indica II | 201 | 32.84% | 67.16% |
| Indica Intermediate | 207 | 63.29% | 36.71% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 90 | 98.89% | 1.11% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610409262 | G->A | LOC_Os06g17920(LOC_Os06g17920.1) | Non-Synonymous SNP |