Detailed information of SNP:
|
SNP ID:
sf0610409786(Gbrowse)
Chromosome: chr06 Position: 10409786 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 57.73% | 42.27% |
| All Indica | 797 | 32.37% | 67.63% |
| All Japonica | 494 | 92.71% | 7.29% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 374 | 13.10% | 86.90% |
| Indica II | 213 | 36.15% | 63.85% |
| Indica Intermediate | 210 | 62.86% | 37.14% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 92 | 77.17% | 22.83% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610409786 | A->T | LOC_Os06g17920(LOC_Os06g17920.1) | Synonymous |