Detailed information of SNP:
|
SNP ID:
sf0610411050(Gbrowse)
Chromosome: chr06 Position: 10411050 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 61.02% | 38.98% |
| All Indica | 789 | 37.39% | 62.61% |
| All Japonica | 497 | 92.76% | 7.24% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 369 | 20.33% | 79.67% |
| Indica II | 210 | 40.00% | 60.00% |
| Indica Intermediate | 210 | 64.76% | 35.24% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610411050 | G->A | LOC_Os06g17920(LOC_Os06g17920.1) | INTRON |