Detailed information of SNP:
|
SNP ID:
sf0610411241(Gbrowse)
Chromosome: chr06 Position: 10411241 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 92.64% | 7.36% |
| All Indica | 794 | 93.07% | 6.93% |
| All Japonica | 496 | 90.32% | 9.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 208 | 76.92% | 23.08% |
| Temperate Japonica | 334 | 85.63% | 14.37% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610411241 | A->T | LOC_Os06g17920(LOC_Os06g17920.1) | INTRON |