Detailed information of SNP:
|
SNP ID:
sf0610411339(Gbrowse)
Chromosome: chr06 Position: 10411339 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 57.78% | 42.22% |
| All Indica | 798 | 32.58% | 67.42% |
| All Japonica | 496 | 92.54% | 7.46% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 374 | 12.57% | 87.43% |
| Indica II | 213 | 36.62% | 63.38% |
| Indica Intermediate | 211 | 63.98% | 36.02% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610411339 | G->A | LOC_Os06g17920(LOC_Os06g17920.1) | INTRON |