Detailed information of SNP:
|
SNP ID:
sf0610411518(Gbrowse)
Chromosome: chr06 Position: 10411518 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 87.11% | 12.89% |
| All Indica | 771 | 82.23% | 17.77% |
| All Japonica | 497 | 92.76% | 7.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 68.72% | 31.28% |
| Indica II | 206 | 93.20% | 6.80% |
| Indica Intermediate | 207 | 94.69% | 5.31% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610411518 | G->A | LOC_Os06g17920(LOC_Os06g17920.1) | INTRON |