Detailed information of SNP:
|
SNP ID:
sf0610411798(Gbrowse)
Chromosome: chr06 Position: 10411798 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 92.71% | 7.29% |
| All Indica | 794 | 93.20% | 6.80% |
| All Japonica | 495 | 90.30% | 9.70% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 207 | 77.29% | 22.71% |
| Temperate Japonica | 333 | 85.59% | 14.41% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610411798 | T->A | LOC_Os06g17920(LOC_Os06g17920.1) | INTRON |