Detailed information of SNP:
|
SNP ID:
sf0610416184(Gbrowse)
Chromosome: chr06 Position: 10416184 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 79.34% | 20.66% |
| All Indica | 798 | 85.34% | 14.66% |
| All Japonica | 497 | 66.80% | 33.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 210 | 81.90% | 18.10% |
| Temperate Japonica | 335 | 62.09% | 37.91% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610416184 | T->G | INTERGENIC | None |