Detailed information of SNP:
|
SNP ID:
sf0610417247(Gbrowse)
Chromosome: chr06 Position: 10417247 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 72.65% | 27.35% |
| All Indica | 796 | 77.76% | 22.24% |
| All Japonica | 496 | 60.48% | 39.52% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 82.80% | 17.20% |
| Indica II | 213 | 67.14% | 32.86% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 61.49% | 38.51% |
| Tropical Japonica | 93 | 66.67% | 33.33% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610417247 | G->C | INTERGENIC | None |