Detailed information of SNP:
|
SNP ID:
sf0610417415(Gbrowse)
Chromosome: chr06 Position: 10417415 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 52.12% | 47.88% |
| All Indica | 798 | 27.07% | 72.93% |
| All Japonica | 497 | 84.71% | 15.29% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 11.47% | 88.53% |
| Indica II | 213 | 36.15% | 63.85% |
| Indica Intermediate | 210 | 45.71% | 54.29% |
| Temperate Japonica | 335 | 86.87% | 13.13% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610417415 | G->A | INTERGENIC | None |