Detailed information of SNP:
|
SNP ID:
sf0610417523(Gbrowse)
Chromosome: chr06 Position: 10417523 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 52.37% | 47.63% |
| All Indica | 798 | 27.19% | 72.81% |
| All Japonica | 496 | 85.08% | 14.92% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 11.73% | 88.27% |
| Indica II | 213 | 36.15% | 63.85% |
| Indica Intermediate | 210 | 45.71% | 54.29% |
| Temperate Japonica | 335 | 86.87% | 13.13% |
| Tropical Japonica | 93 | 77.42% | 22.58% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610417523 | C->T | INTERGENIC | None |