Detailed information of SNP:
|
SNP ID:
sf0610418167(Gbrowse)
Chromosome: chr06 Position: 10418167 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 60.13% | 39.87% |
| All Indica | 786 | 34.99% | 65.01% |
| All Japonica | 495 | 93.33% | 6.67% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 365 | 15.89% | 84.11% |
| Indica II | 210 | 39.05% | 60.95% |
| Indica Intermediate | 211 | 63.98% | 36.02% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 77.42% | 22.58% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610418167 | G->T | INTERGENIC | None |