Detailed information of SNP:
|
SNP ID:
sf0610418956(Gbrowse)
Chromosome: chr06 Position: 10418956 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 68.23% | 31.77% |
| All Indica | 798 | 87.84% | 12.16% |
| All Japonica | 485 | 45.57% | 54.43% |
| Aus | 66 | 10.61% | 89.39% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 210 | 80.48% | 19.52% |
| Temperate Japonica | 329 | 50.46% | 49.54% |
| Tropical Japonica | 91 | 27.47% | 72.53% |
| Japonica Intermediate | 65 | 46.15% | 53.85% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610418956 | T->G | INTERGENIC | None |