Detailed information of SNP:
|
SNP ID:
sf0610420020(Gbrowse)
Chromosome: chr06 Position: 10420020 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 83.01% | 16.99% |
| All Indica | 799 | 85.73% | 14.27% |
| All Japonica | 485 | 75.88% | 24.12% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 69.95% | 30.05% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 323 | 70.28% | 29.72% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610420020 | A->T | LOC_Os06g17930(LOC_Os06g17930.1) | INTRON |