Detailed information of SNP:
|
SNP ID:
sf0610420077(Gbrowse)
Chromosome: chr06 Position: 10420077 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1274 | 93.56% | 6.44% |
| All Indica | 732 | 94.67% | 5.33% |
| All Japonica | 421 | 90.97% | 9.03% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 98.91% | 1.09% |
| Indica II | 175 | 87.43% | 12.57% |
| Indica Intermediate | 189 | 93.12% | 6.88% |
| Temperate Japonica | 266 | 90.98% | 9.02% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 61 | 91.80% | 8.20% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610420077 | T->G | LOC_Os06g17930(LOC_Os06g17930.1) | INTRON |