Detailed information of SNP:
|
SNP ID:
sf0610421330(Gbrowse)
Chromosome: chr06 Position: 10421330 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 62.90% | 37.10% |
| All Indica | 798 | 41.10% | 58.90% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 66 | 43.94% | 56.06% |
| Indica I | 374 | 27.81% | 72.19% |
| Indica II | 213 | 40.85% | 59.15% |
| Indica Intermediate | 211 | 64.93% | 35.07% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610421330 | C->T | LOC_Os06g17930(LOC_Os06g17930.1) | INTRON |