Detailed information of SNP:
|
SNP ID:
sf0610428990(Gbrowse)
Chromosome: chr06 Position: 10428990 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 70.11% | 29.89% |
| All Indica | 773 | 47.87% | 52.13% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 359 | 35.10% | 64.90% |
| Indica II | 206 | 48.06% | 51.94% |
| Indica Intermediate | 208 | 69.71% | 30.29% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610428990 | C->T | INTERGENIC | None |