Detailed information of SNP:
|
SNP ID:
sf0610431374(Gbrowse)
Chromosome: chr06 Position: 10431374 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 59.06% | 40.94% |
| All Indica | 799 | 85.23% | 14.77% |
| All Japonica | 497 | 25.35% | 74.65% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 60.66% | 39.34% |
| Temperate Japonica | 335 | 18.81% | 81.19% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610431374 | T->C | LOC_Os06g17940(LOC_Os06g17940.1) | INTRON |