Detailed information of SNP:
|
SNP ID:
sf0610432781(Gbrowse)
Chromosome: chr06 Position: 10432781 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 58.09% | 41.91% |
| All Indica | 797 | 93.10% | 6.90% |
| All Japonica | 497 | 10.87% | 89.13% |
| Aus | 66 | 3.03% | 96.97% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 209 | 95.22% | 4.78% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 35.11% | 64.89% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610432781 | T->A | LOC_Os06g17940(LOC_Os06g17940.1) | INTRON |