Detailed information of SNP:
|
SNP ID:
sf0610434198(Gbrowse)
Chromosome: chr06 Position: 10434198 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 59.83% | 40.17% |
| All Indica | 799 | 94.74% | 5.26% |
| All Japonica | 497 | 12.07% | 87.93% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 35.11% | 64.89% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610434198 | C->T | INTERGENIC | None |